Alright, so I’m continuing my quest here and I’m getting closer. I tried using BibTeX as an export format from Bookends and now it seems like I can get attachments, DOIs, and PMIDs. HOWEVER, whenever I import from BibTeX all articles are classified as ‘miscellaneous’ instead of Journal article. If I export as RIS the articles are correctly classified, but then I don’t get PMIDs or DOIs, leaving the references incomplete.
A couple of critical problems with the ‘miscellaneous’ classification: (1) There is no way to reclassify multiple references, and (2) when the references are classified as ‘miscellaneous’ Paperpile can’t match the article up with online resources so you can’t download PDFs, update metadata, etc.
This is what my BibTeX format looks like for the same article as above:
@Article{,
title = {Forecasting Epidemiological and Evolutionary Dynamics of Infectious Diseases.},
author = {Gandon, S and Day, T and Metcalf, CJ and Grenfell, BT},
abstract = {Mathematical models have been powerful tools in developing mechanistic understanding of infectious diseases. Furthermore, they have allowed detailed forecasting of epidemiological phenomena such as outbreak size, which is of considerable public-health relevance. The short generation time of pathogens and the strong selection they are subjected to (by host immunity, vaccines, chemotherapy, etc.) mean that evolution is also a key driver of infectious disease dynamics. Accurate forecasting of pathogen dynamics therefore calls for the integration of epidemiological and evolutionary processes, yet this integration remains relatively rare. We review previous attempts to model and predict infectious disease dynamics with or without evolution and discuss major challenges facing the development of the emerging science of epidemic forecasting.},
type = {Journal article},
journal = {Trends Ecol Evol},
volume = {31},
number = {10},
pages = {776–788},
year = {2016},
url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=27567404},
file = {file:///Users/andersen/Dropbox%20(ALab)/Lab/Publishing/Library/2016%20-%20Gandon%20-%20Forecasting%20Epidemiological%20and%20Evolutionary%20Dynamics%20of%20Infectious%20Diseases.pdf},
issn = {0169-5347},
pmid = {27567404},
doi = {10.1016/j.tree.2016.07.010}
}
I output type in this particular export, but if I leave that out, the article is also misclassified.
Any idea how to fix this?
Screenshots:
BibTeX:
RIS: