When exported in Markdown, annotations appear in order from top to bottom, which makes sense, except for documents in columns (which is almost everything in journal articles that I read!). Manually reordering them after I export is extremely time consuming. Any workarounds? If not, consider this a feature request. 
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Thanks for pointing this out, @Chante. No workarounds to offer from my side, but I’ve added your feedback to our tracker for the team to consider 
I was just about to write a post about this as well, it would be great if you could fix this!