Loving Paperpile, But a Few QoL Tweaks Would Make It Even Better

Hi Paperpile team and folks,

Long-time user here—I’ve been with Paperpile for years, and it’s honestly the best reference manager out there for my autistic/ADHD brain. The way it handles organization is pure magic: fluid folders, tags, and libraries mean I can rearrange everything on the fly without losing momentum. For me, knowledge is all about organizing, and Paperpile nails that. Adding papers via the Chrome extension is seamless, and I’ve seen you all roll out some incredible updates lately—like the Safari and Firefox integrations, which open it up to more users. Plus, the upcoming AI features sound exciting; I know that’s been a huge focus with how fast things are evolving. You guys are clearly working hard and being super responsive—major props!

That said, there are a few small friction points that keep popping up in my daily workflow. These are mostly quick QoL fixes that would save mental energy and let me stay in the flow. I’ve mentioned some before, but here’s a clear rundown:

• Paper-level notes (the ones for remembering key takeaways on a paper): These are crucial for jogging my memory about what a paper’s about, but they don’t preserve line breaks—everything collapses into a wall of text when I reload. Links aren’t clickable either, so if I want to reference another paper, I have to copy-paste manually. My workaround? Adding a vertical line of dots for spacing to make it readable, but it’s clunky and feels unnecessary for such a core feature. Basic support for line breaks, clickable links, and maybe simple formatting (bold/italic, bullets) would be a game-changer without turning it into a full editor.

• Back navigation in PDFs for citations: When I’m reading (say, in the methods section) and click a citation to jump to the references, there’s no easy way back to my exact spot—I have to scroll up, which risks distractions from figures or tables. A simple “back” arrow to return to where I was would be huge. Also, hover previews for full citations (like in Zotero) while reading would speed things up without leaving the page.

• In-PDF highlight notes: When adding a note to a highlight, pressing Enter is inconsistent—sometimes it adds a line break and stays open, sometimes it closes the note and jumps back to the text. I’d love it to reliably allow multi-paragraph notes without exiting prematurely.

I know you’re in the midst of a big PDF viewer overhaul, and these might fit into that. They’re small things, but they add up to unnecessary friction in high-stakes research, where every second of flow matters. :slight_smile:

On a related note, the “internal tracker” for suggestions is a smart idea in theory—it values community input and keeps things organized, which I appreciate (especially if the team likes batching and roadmaps for efficiency). But honestly, it can feel a bit discouraging: seeing old threads (4-5 years sometimes) with +1s but no updates makes me hesitate to post. It’s not truly representative since only detail-oriented heavy users (like those of us spotting these snags) tend to chime in or vote—most folks just adapt without noticing or complaining. For quick, low-impact fixes that boost QoL (without derailing bigger projects), maybe lean on some “enlightened dev” evaluation based on merit rather than pure votes? :sweat_smile: No perfect system, I get it, but it’d encourage more feedback from users like me.

Anyway, thanks for all the great work—you’re already making research smoother, and these tweaks would take it to the next level. Excited to see what’s coming!

Best,

Samuel

Thank you for your kind words, @SamuelF! We’re happy that Paperpile helps you organize your papers.

Thank you for sharing your detailed feedback on your pain points in your workflow. Our team plans to implement a revamp of note-taking, so it’s helpful to know how the note panel in the reference list (paper-level notes) could be improved to have clickable links and text formatting. Currently, in the notes panel under references, you can embolden text and use italics - just use the keyboard shortcuts Cmd+B / Cmd+I (macOS) or Ctrl+B / Ctrl+I (Windows/Linux).

Back navigation in PDFs for citations and hover previews for citations in the text in the PDF viewer are both good suggestions, and I agree that these features would reduce friction while reading. We’ve also noted your comment about the behavior of the sticky note annotations being inconsistent on pressing Enter. It should add a line break in the annotation.

Thanks too for sharing your thoughts on tracking suggestions from users! Recording community input is genuinely valuable to us because it lets us see patterns at a glance, but you’re right that votes or +1s alone don’t tell the whole story. To decide what ships, we use multiple inputs, not just +1s. We weigh forum feedback alongside support tickets, in‑app chat, and survey data. If a low‑vote item clearly removes friction for many users or unblocks a future feature, we prioritize work on it.

So please keep posting and sharing your feedback—even a quick “+1” to a forum thread or a short note about how you use the feature helps us scope it correctly. And if you run into a small but painful issue, let us know.

Hi @SamuelF – thanks for your kind words about Paperpile in general, and also for sharing your specific and actionable feedback.

We hear you loud and clear about the deficiencies in paper-level notes. It’s going to take some time to get right, but we have ambitious plans to make this a much better experience overall with a more powerful data model and user experience. It goes without saying that Markdown-like support for paper-level notes would be included in that.

Re: PDF back navigation for citations: as far as I know, Paperpile’s PDF viewer should support this today, at least for PDFs with explicit links between in-text citations and the bibliography. For example, if I import [2507.16075] Deep Researcher with Test-Time Diffusion open the PDF and click on the first citation to Hu et al. 2024, I can click the browser’s back button to return to the original scroll position. If this isn’t working for you, it may be a bug – please contact support@paperpile.com and I’ll make sure we chase that down.

Re: “enlightened dev” evaluation of QoL improvements – in practice, we take this approach. Our team works hard to diligently collect and aggregate signals and feature votes from users, but we also make sure to use the product, trust our own sense of “goodness”, and pay attention to important trends and emerging patterns. For example, we’re accelerating work to improve how we support preprint-to-published paper metadata in response to the growing use of platforms like arXiv and bioRxiv / medRxiv. In fact, not too long ago I made the case for investing in targeted improvements to the PDF viewer even before we land a major PDF viewer overhaul. Sometimes we’re held back by unfortunate technical constraints, but I assure you we’re trying to find a healthy balance of small wins and big-bang feature releases over time.

Thanks,
Greg